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Izeni P. Farias, Guillermo Ortí, and Axel Meyer
Taxa of fishes included in this study. Taxonomy follows Kullander ('98). Genera between quotation marks are not valid for the species indicated (e.g., `Aequidens', `Geophagus', `Cichlasoma'), but are used for lack of a better name. Voucher specimen and locality information is available from I.P.F. Numbers identify the source of the sequence data analyzed in the present paper. 1: Tmo-M27 data from Zardoya et al. ('96); 2: Tmo-4C4 data from Streelman and Karl ('97); 3: 16S rRNA data from Farias et al. ('99); 4: new data determined in present study.
| Taxa | 16S rRNA | Tmo-M27 | Tmo-4C4 |
| Embiotocidae | |||
| Cymatogaster aggregata | 3 | ... | ... |
| Damalichthys vacca | 4 | 1 | 2 |
| Pomacentridae | |||
| Abudefduf sp. | 3 | 1 | 2 |
| Cichlidae | |||
| Etroplinae [Malagasy and India] | |||
| Etroplus maculatus | 3 | 1 | 2 |
| Oxylapia polleni | 3 | ... | ... |
| Paretroplus polyactis | 3 | 1 | 2 |
| Ptychochromoides betsileanus | 3 | ... | ... |
| Ptychochromis oligocantus | 3 | ... | ... |
| Pseudocrenilabrinae [Africa] | |||
| Astatoreochromis alluaudi | 4 | 1 | 2 |
| Astatotilapia callipitera | 4 | 1 | 2 |
| Boulengerochromis microlepsis | 3 | 1 | 2 |
| Chalinochromis brichardi | 3 | ... | ... |
| Chromidotilapia sp. | 3 | ... | ... |
| Haplochromis sp. | 3 | ... | ... |
| Hemichromis bimaculatus | 3 | 1 | 2 |
| Heterochromis multidens | 3 | 4 | 4 |
| Labidochromis caeruleus | 4 | 1 | 2 |
| Melanochromis sp. | 4 | ... | ... |
| Oreochromis niloticus | 3 | ... | ... |
| Pelvicachromis pulcher | ... | 1 | 2 |
| Serranochromis robustus | 3 | 1 | 2 |
| Thysochromis sp. | 3 | ... | ... |
| Tilapia sp. | 3 | ... | ... |
| Tropheus moorii | 4 | 1 | 2 |
| Tylochromis polylepis | 4 | 1 | 2 |
| Heterochromidinae [Africa] | |||
| Heterochromis multidens | 3 | 4 | 4 |
| Retroculinae [South America] | |||
| Retroculus sp. | 3 | 4 | 4 |
| Retroculus xinguensis | 3 | 4 | 4 |
| Cichlinae [South America] | |||
| Cichlini | |||
| Cichla sp. | 4 | 4 | 4 |
| Cichla monoculus | 3 | ... | ... |
| Cichla orinocensis | 3 | 4 | 4 |
| Cichla temensis | 3 | ... | ... |
| Crenicichlini | |||
| Crenicichla sp. | 3 | ... | ... |
| Crenicichla lugubris | 3 | ... | ... |
| Crencichla regani | 3 | 4 | 4 |
| Teleocichla centrarchus | 3 | 4 | 4 |
| Teleocichla cinderella | 3 | ... | ... |
| Astronotinae [South America] | |||
| Astronotini | |||
| Astronotus crassipinnis | 3 | ... | ... |
| Astronotus ocellatus | 3 | 1 | 2 |
| Chaetobranchini | |||
| Chaetobranchopsis orbicularis | ... | 4 | 4 |
| Chaetobranchus flavescens | 3 | ... | ... |
| Chaetobranchus semifasciatus | 3 | 4 | 4 |
| Geophaginae [South America] | |||
| Acarichthyini | |||
| Acarichthys heckelii | 3 | 4 | 4 |
| Guianacara sp. | 3 | 4 | 4 |
| Crenicaritini | |||
| Biotoecus sp. | 4 | ... | ... |
| Crenicara sp. | ... | 4 | 4 |
| Geophagini | |||
| Apistogramma sp. 1 | 3 | ... | ... |
| Apistogramma sp. 2 | 3 | 4 | 4 |
| Biotodoma wavrini | 3 | 4 | 4 |
| Geophagus sp. | 4 | 4 | 4 |
| Geophagus altifrons | 3 | 4 | 4 |
| Geophagus argyrostictus | 4 | 4 | 4 |
| Geophagus proximus | 3 | ... | ... |
| `Geophagus' brasiliensis | 3 | 4 | 4 |
| Gymnogeophagus gymnogenys | 3 | 4 | 4 |
| Gymnogeophagus labiatus | 3 | ... | ... |
| Mikrogeophagus altispinosus | 3 | 4 | 4 |
| Satanoperca acuticeps | 3 | ... | ... |
| Satanoperca jurupari | 3 | ... | ... |
| Taeniacara candidi | 3 | 4 | 4 |
| Cichlasomatinae [South America] | |||
| Acaroniini [South America] | |||
| Acaronia sp. | 3 | ... | ... |
| Acaronia nassa | 3 | 4 | 4 |
| Cichlasomatini [South America] | |||
| Aequidens michaeli | 3 | 4 | 4 |
| `Aequidens' sp. | 3 | ... | ... |
| Bujurquina sp. | 3 | 4 | 4 |
| Cichlasoma amazonarum | 3 | 4 | 4 |
| Laetacara curviceps | 3 | 4 | 4 |
| Nannacara sp. | 3 | ... | ... |
| Heroini [South America] | |||
| Caquetaia spectabilis | 3 | 4 | 4 |
| Heros sp. | 3 | 4 | 4 |
| Hoplarchus psittacus | 3 | 4 | 4 |
| Hypselecara coryphaenoides | 3 | 4 | 4 |
| Mesonauta insignis | 3 | 4 | 4 |
| Pterophyllum scalare | 3 | 4 | 4 |
| Symphysodon aequifasciatus | 3 | 4 | 4 |
| Uaru amphiacanthoides | 3 | 4 | 4 |
| Heroini [Central America] | |||
| `Cichlasoma' octofasciatum | 4 | 4 | 4 |
| Petenia splendida | 4 | 4 | 4 |
| Archocentrus citrinellum | 3 | ... | ... |
| Archocentrus nigrofasciatus | 3 | ... | ... |
Izeni P. Farias, Guillermo Ortí, and Axel Meyer. 2000.Total evidence: molecules, morphology, and the phylogenetics of cichlid fishes. Journal of Experimental Zoology (Mol and Dev Evol) 288: 76-92.
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